Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | V | W | Z A A (minisim.testing.Estimate attribute) absorption_per_um (minisim.VesselLayer attribute) acquisition (minisim.Spec attribute) active_rate_hz (minisim.CellActivity attribute) amplitude (minisim.Neuropil attribute) amplitude_per_cell (minisim.GroundTruth attribute) axes (minisim.SweptSpec attribute) B bit_depth (minisim.ImageSensor attribute) bleach_susceptibility (minisim.Bleaching attribute) bleaching (minisim.GroundTruth attribute) branch_angle_deg (minisim.VesselLayer attribute) branch_area_main (minisim.VesselLayer attribute) branch_prob (minisim.VesselLayer attribute) brightness_cv (minisim.CellActivity attribute) C C (minisim.GroundTruth attribute) (minisim.testing.Estimate attribute) cache_dir() (in module minisim) cache_path() (in module minisim) canvas_shape (minisim.Scene property) Cell (class in minisim) center_offset_um (minisim.IlluminationProfile attribute) (minisim.Vignette attribute) centers_um (minisim.GroundTruth attribute) D damping_ratio (minisim.BrainMotion attribute) dendrite_length_um (minisim.NeuronPopulation attribute) dendrite_width_um (minisim.NeuronPopulation attribute) density_per_mm3 (minisim.NeuronPopulation attribute) depth_of_field_um (minisim.Optics attribute) depth_range_um (minisim.NeuronPopulation attribute) depth_um (minisim.VesselLayer attribute) detectable (minisim.GroundTruth attribute) duration_s (minisim.Acquisition attribute) E emission_nm (minisim.Optics attribute) enabled (minisim.Vasculature attribute) Estimate (class in minisim.testing) excitation_intensity (minisim.Bleaching attribute) exponent (minisim.IlluminationProfile attribute) (minisim.Vignette attribute) F f0 (minisim.CellActivity attribute) falloff (minisim.IlluminationProfile attribute) (minisim.Vignette attribute) field_curvature_radius_um (minisim.Optics attribute) field_pearson() (in module minisim) finalize() (in module minisim) focal_depth_in_tissue_um (minisim.Acquisition attribute) focal_depth_um (minisim.GroundTruth attribute) fov_offset (minisim.GroundTruth attribute) fov_shape (minisim.GroundTruth attribute) fps (minisim.Acquisition attribute) front_working_distance_um (minisim.Acquisition attribute) G gain_adu_per_e (minisim.ImageSensor attribute) ground_truth (minisim.Recording attribute) GroundTruthBuilder (class in minisim) H has_movie (minisim.Scene property) hungarian_match() (in module minisim) I illumination (minisim.GroundTruth attribute) image_sensor (minisim.Acquisition attribute) in_focus (minisim.GroundTruth attribute) irregularity (minisim.NeuronPopulation attribute) K kind (minisim.Bleaching attribute) (minisim.BrainMotion attribute) (minisim.CellActivity attribute) (minisim.CellOptics attribute) (minisim.Composite attribute) (minisim.IlluminationProfile attribute) (minisim.Leakage attribute) (minisim.Neuropil attribute) (minisim.PlaceNeurons attribute) (minisim.Sensor attribute) (minisim.StepSpec attribute) (minisim.Vasculature attribute) (minisim.Vignette attribute) L layers (minisim.Vasculature attribute) leakage (minisim.GroundTruth attribute) level (minisim.Leakage attribute) locomotion_axis (minisim.BrainMotion attribute) locomotion_fraction (minisim.BrainMotion attribute) locomotion_freq_hz (minisim.BrainMotion attribute) M magnification (minisim.Optics attribute) make_recording() (in module minisim.testing) Match (class in minisim) matched_pairs() (minisim.Match method) max_shift_um (minisim.BrainMotion attribute) mean_iou (minisim.Match property) min_distance_um (minisim.NeuronPopulation attribute) min_radius_um (minisim.VesselLayer attribute) model (minisim.BrainMotion attribute) morphology (minisim.NeuronPopulation attribute) motion_amplitude_um (minisim.BrainMotion attribute) movie (minisim.Scene property) N n_components (minisim.Neuropil attribute) n_px_height (minisim.ImageSensor attribute) n_px_width (minisim.ImageSensor attribute) n_roots (minisim.VesselLayer attribute) na (minisim.Optics attribute) neuropil_population (minisim.GroundTruth attribute) neuropil_spatial (minisim.GroundTruth attribute) neuropil_temporal (minisim.GroundTruth attribute) O observed (minisim.Recording attribute) observed_footprint() (minisim.Cell method) observed_gain (minisim.GroundTruth attribute) observed_sigma_px (minisim.GroundTruth attribute) ones() (minisim.Scene class method) opacity (minisim.VesselLayer attribute) optics (minisim.Acquisition attribute) output (minisim.Spec attribute) P p_active_to_quiescent (minisim.CellActivity attribute) p_quiescent_to_active (minisim.CellActivity attribute) photons_per_unit (minisim.Sensor attribute) pixel_pitch_um (minisim.ImageSensor attribute) planted (minisim.GroundTruth attribute) population_coupling (minisim.Neuropil attribute) population_tau_s (minisim.Neuropil attribute) populations (minisim.PlaceNeurons attribute) positions_um (minisim.NeuronPopulation attribute) precision (minisim.SpikeScore attribute) precision() (minisim.Match method) profile (minisim.Leakage attribute) Q quantum_efficiency (minisim.ImageSensor attribute) quiescent_rate_hz (minisim.CellActivity attribute) R read_noise_e (minisim.ImageSensor attribute) recall (minisim.SpikeScore attribute) recall() (minisim.Match method) Report (class in minisim.testing) resonance_freq_hz (minisim.BrainMotion attribute) root_radius_um (minisim.VesselLayer attribute) S S (minisim.GroundTruth attribute) (minisim.testing.Estimate attribute) save_intermediates (minisim.Output attribute) scatter_blur_per_um (minisim.Tissue attribute) scatter_mfp_emission_um (minisim.Tissue attribute) scatter_mfp_excitation_um (minisim.Tissue attribute) Scene (class in minisim) score() (in module minisim.testing) seed (minisim.Spec attribute) shift_rmse() (in module minisim) shifts (minisim.GroundTruth attribute) (minisim.testing.Estimate attribute) sigma_um (minisim.Leakage attribute) simulate() (in module minisim) simulate_cached() (in module minisim) simulate_video() (in module minisim) snapshots (minisim.Recording attribute) soma_radius_um (minisim.NeuronPopulation attribute) spatial_sigma_um (minisim.Neuropil attribute) spec (minisim.Recording attribute) SpecWarning (class in minisim) spike_precision_recall() (in module minisim) spike_sim_hz (minisim.CellActivity attribute) SpikeScore (class in minisim) step_per_radius (minisim.VesselLayer attribute) steps (minisim.Spec attribute) store_dtype (minisim.Output attribute) summary() (minisim.testing.Report method) sweep() (in module minisim) T tau_decay_s (minisim.CellActivity attribute) tau_rise_s (minisim.CellActivity attribute) temporal_tau_s (minisim.Neuropil attribute) tissue (minisim.Acquisition attribute) tortuosity_deg (minisim.VesselLayer attribute) trace_noise (minisim.CellActivity attribute) trace_pearson() (in module minisim) trajectory_um (minisim.BrainMotion attribute) turnover_tau_s (minisim.Bleaching attribute) V vasculature_mask (minisim.GroundTruth attribute) vessel_overlap_fraction (minisim.GroundTruth attribute) vignette (minisim.GroundTruth attribute) W walk_step_um (minisim.BrainMotion attribute) Z zeros() (minisim.Scene class method)
